You will always get sediment in the bottom of your bottles, whether you clear the beer or not.
When you bottle your beer you add some priming sugar to the bottles. Once in the bottle they yeast gets to work eating this sugar to produce some CO2, which is required to carbonate your beer, and a little alcohol. The sediment is the dead yeast which falls to the bottom of the bottle.
A yeast like Nottingham or S-04 will fall to the bottom of the bottle better tan something like US-05.
The only way to avoid this is to keg your beer first, then carbonate it, then bottle it ready carbonated, unless you are very careful about this though the beer won't keep for so long as you will probably get some air in the bottle which can oxidise the beer.